rs47933892 SNP Detail

Summary

• ID
  rs47933892
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19947129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G ATGTAGGCCC CGTGAGATAA CCCCACACCC CTCGTCATTT
  CACTCCATCA CATATGTCAT CTCACCCCAT ATCCCTACCC CCACCTCCTT GCCTTCTCTA
  Y
  ATAAGCAAGT ATCTAGTTTA ATAAAGTGAG TTTCTGCTTT GACAACACTC CTGGCCCAGG
  TGTGTTTGTT TGGGGCCATC AACACTCACC ATCCCACTCA G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134671195	ENSMUSSNP1124701	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47933892					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19947129 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13006	CpG island 13006	1593 bp proximal
Gm64742	predicted gene, 64742	1891 bp upstream
Rr574033	regulatory region 574033	1401 bp proximal
Rr574034	regulatory region 574034	1832 bp proximal
Rr574035	regulatory region 574035	1902 bp proximal
Tssr28531	transcription start site region 28531	1890 bp upstream
Tssr28532	transcription start site region 28532	1938 bp upstream