rs47930781 SNP Detail

Summary

• ID
  rs47930781
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86805562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGTAACA GGAAAAAAAG
  AAAAATTAAA AAAAAAACTT TCCCACTGTG ACTTATCACA AGAAAGGCAT TCTATCTGTA
  AGAATATTTG AAAGGCCTTG TTTTCTATAC AACTGTTTAA AAGTTCAAAG CTTTGGTTCT
  AACTAACCAA ATTTCACCAT GTGCTTAAAT AAAATTATAA AACGACCAGT ATTCCTCTTT
  R
  CAGATCATTT ATTCTAGTCA ACTTGTTTAT AAATACATGG GTTGCACACT AAGAATTTTC
  ATTTATCTTT TTCTTTTTCC CTTTTGCAGT GCTGGGCATG GAACCTGGGG CCCATTACTG
  AGCTATACCC AACTTTAATG ATGTTGAAAA CCATGTATAT TTGGTTTTTC TCCCTGTACC
  AAAATATACC CAAGAACAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135450676	ENSMUSSNP6957188	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47930781					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86805562 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dclk2	doublecortin-like kinase 2			Intron
				Noncoding-Transcript-Variant
Rr579411	regulatory region 579411			248 bp distal
Tssr33911	transcription start site region 33911			1178 bp downstream