rs47928585 SNP Detail

Summary

• ID
  rs47928585
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:73070463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAATTTTGC TTGTGATACT
  CTGTTCAAGT CAAGTTTAAG TCCCAGATAA GTAAGCTTGG TCAAGTCACT TAACCCTCTG
  AGGCTCCCAA CAGCTCCCAG CAATGTCTTC ATCTGCTCCC CAGAGGAGAG GAACCCGCAA
  GACTGGGGAG GAGACGAAAG GCCAGTAAGA GGAGAAATCC AGAGAGCATT TATGCCCACC
  R
  GACACACAAC CTCAGCACCA GATGTGAGGA GAGAGAGAAT GTTCAAGAGC CTTGCTTGAA
  ACAAAGAAAC AAGCAAAACC ACAGGCTCTT AAACAAAGAC CCTGAAGGGT TGATCTAGGA
  GGAAAGAGCT AAATGCACCC ACTCTCCTGC ATTGTCAGTC ACCAAAGGCC TGGCCCCCCC
  AGTGGTCAGT GGGATTGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss61020315	NES16107455	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs47928585					SNP	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61020315	NES16107455	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:73070463 () rs orientation: forward

Symbol	Name	Function Class
Gm44645	predicted gene 44645	1535 bp upstream
Rgma	repulsive guidance molecule family member A	816 bp downstream
Rr648938	regulatory region 648938	899 bp distal
Rr648939	regulatory region 648939	1019 bp distal
Rr648940	regulatory region 648940	within coordinates
Rr648941	regulatory region 648941	1341 bp proximal
Rr648942	regulatory region 648942	1583 bp proximal
Rr648943	regulatory region 648943	1936 bp proximal
Tssr72937	transcription start site region 72937	1824 bp downstream