rs47927872 SNP Detail

Summary

• ID
  rs47927872
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130550822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTAACG GAAGCGTTCT
  AAATCCAGGT AACGCATCAG GAAGAAGTCG CTGTCTTCAG CAGCCGAACA ATTTCTGCTA
  GTCCCCAGGG AACAGTCCTA ACTGTAAACC CTGGCATGAT AAAACACCTT AAAATGCAGG
  TCACGAGGAG GGTTCTCAGT GAAGACTTTC TGAACGGCGA CCAGTGTTTG TGTTAAATGT
  W
  CTCTTGGGCA TCAACAGCCT CTAACAGAAT CTCCCATGCC AGAGGACATA CCAATCAGAA
  ATAGGGCCCT CCTATAACAT AAAAACTAAC AACCAAGCAA ACAAACAAAC AAAACACCCT
  AAAGCAAACC CCTTAGTGAC TGCTGAGTCA GCATTCAGTT ATTTCTTTTT CTTGGATGAA
  CAAAGCTCAC ATACCAACAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss61080263	NES16598296	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs47927872					SNP	T	T	T	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61080263	NES16598296	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130550822 () rs orientation: forward

Symbol	Name	Function Class
Gm42997	predicted gene 42997	within coordinates
Gm43524	predicted gene 43524	288 bp upstream
Gm65129	predicted gene, 65129	1416 bp downstream
Rr585206	regulatory region 585206	235 bp proximal