rs47924639 SNP Detail

Summary

• ID
  rs47924639
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95027146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGGGTTC AGGACAGCCA
  GAGCTACACA GAGAAATCTT TATCTGGAGT CTTGGTGGGG TTGTATGTAT GGGGAGGGGT
  GTCAGCGTGA CTGAGTTCCA GTTAGTGTAA AATAACAATT GCTTGGTTGG TTTTTCCTGT
  TTTGAGAGAA AGCAATATCG CCTAGTCAAA ACAGGCCAGA CATAGTGGTG GAGATCTGTG
  A
  TCTCAGTCTA TGGCAGACAG AGACAGCAGA ATCAGGCATT CAAGGCCTTT CTGGATTGTA
  TGAGCCTTGA CTCTAACGGG AAATGTCTAA GTCAGGGAGA GATTTCTAGG CGGGCTCTGA
  CCAGGCTTGA GAGGACCGTG TCCACGTGGA GGAACAGCAC AGATCTGTGG TTCATTTAGA
  GATAAAGGAT CAGAGTACTG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135510011	ENSMUSSNP7010306	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47924639					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95027146 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr580818	regulatory region 580818			1707 bp proximal
Vps72	vacuolar protein sorting 72			Intron
				Noncoding-Transcript-Variant