rs47924599 SNP Detail

Summary

• ID
  rs47924599
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:124506503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAGAGTGA GTTCCAGGGC
  AGCCAGGCAC AGAGAAACCC TGTCTTGGAA AAAACGGAAA AAAGAAAAAA AAAAAAGAAA
  AAAGAAAGTA AAACTAGGGG ATGGCGAGAT GGCTCCGCGG GTAAGAGCAG TGACTGCTCT
  TCTGAAGGTC CTGAGTTCAA ATCCCAGCAA CCACATGGTA GCTCACAACC ACCCGTAATG
  W
  GATCTGATGC TCTCTTCTGG TGCATCTGAA GACAGCTATA GTGTACTTAC ATATAATAAT
  AAATCTAAAA AAAAAAAGTA AAACAAAAAA AGTTATATTT TAAAAAGAGA TTTAGGACCC
  ACAAAATGGA TGAAGGTGCT TGCTGCCAAG GCTGCCGAGG CACACACAGT GAAAGGAGAG
  AACCAACCTT CACAAATTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147999909	ENSMUSSNP3022223	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47924599					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:124506503 () rs orientation: forward

Symbol	Name	Function Class
3100002H09Rik	RIKEN cDNA 3100002H09 gene	1907 bp upstream
Gm2164	predicted gene 2164	within coordinates