rs47923145 SNP Detail

Summary

• ID
  rs47923145
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8639028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCACCGT GCGGTTTGCC
  CTAATCACAG CGCGCTGCCT CTTCCACCGT GAGGGCCTTC CTTATCCATC TCTTTAGAGG
  CGGATACAGA TACACAACAC ACATAAAACA CCTGGCAGCC AGAGCTCACC GTGAGTGCCA
  ATCTCTGTCT CCTTAAAATA GCAGAAGGAC TTTTGGGAGG AGGTCTAGGG CTTACTTAAA
  Y
  GGGGGTAACA TTTGAGACCC AAAGCTCACA AAAGGAAGGT CCTGCTTTGC CCAGAGTCTC
  CAGTTTAGTT GGCAGCCTGG CAGCCGGTCT TCCCCATTTT CTGGGTCCCT CACCTGCTCC
  TCTTCCCTCC CTTCCCTCCC CTTTCCTTTC CCTAGAAAGC ATTGACTCCA TGCCCCTCCC
  CTCCAAGTCT GCTGTCCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146766645	ENSMUSSNP251885	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss323245280	CHEV_10_8483062	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47923145					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8639028 () rs orientation: forward

Symbol	Name	Function Class
Rr384117	regulatory region 384117	245 bp downstream
Rr427375	regulatory region 427375	1814 bp distal
Rr427376	regulatory region 427376	within coordinates
Rr427377	regulatory region 427377	240 bp proximal
Sash1	SAM and SH3 domain containing 1	Intron
Tssr3133	transcription start site region 3133	868 bp upstream
Tssr96640	transcription start site region 96640	1005 bp upstream
Tssr96641	transcription start site region 96641	981 bp upstream
Tssr96642	transcription start site region 96642	950 bp upstream
Tssr96643	transcription start site region 96643	894 bp upstream
Tssr96644	transcription start site region 96644	798 bp upstream
Tssr96645	transcription start site region 96645	648 bp upstream