rs47922524 SNP Detail

Summary

• ID
  rs47922524
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126404610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGACATA TTTATGTCTT
  TCCAAGCAAG CACTGATAAC CTTTTTTTTT CATTTCTTTA TTTCTTTTCA AAGTTCGTAA
  TTTTTTATTA TAAAATTTTA TTTTCATTTA TTTATTTTGT GTTACGTGTG GGCAAATGAC
  TTTGCCTGTA TATGGAGGTT AGAGGACAGC TGGCAGCAAT TCTGGATAAA GGTCAGGTTG
  Y
  CAGGCTTGTG TGAAAGTTCC CTAATCTGCT GAGCCCTCCC AGCTGGCCCC TGCCTTTCCC
  CCTAACCTAC CTACTTCCTT GGCTGCCCAC TCCCTCTTTC TCTCTTTCAA ACTGGACATT
  TTGGTCTCCA GTTTTACTTA AAATTACAAC ACATCCCTGT GTTGTGGAAA TTCCTTTGAA
  CTCTGAAGAA CTGCACCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135837043	ENSMUSSNP7245094	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320946674	CHEV_3_126313879	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47922524					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126404610 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm17225	predicted gene 17225			1553 bp upstream
Rr584652	regulatory region 584652			1564 bp distal
Rr584653	regulatory region 584653			1063 bp distal
Rr584654	regulatory region 584654			within coordinates
Rr584655	regulatory region 584655			516 bp proximal
Rr584656	regulatory region 584656			1737 bp proximal
Tssr35522	transcription start site region 35522			901 bp downstream