rs47917635 SNP Detail

Summary

• ID
  rs47917635
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:20943079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAACCACA TTTCCTGCAT
  ACTATTGACT CCCCAAGCTA ATACAAGCAA CCTCTCCATC CACCCTTGCT CAAACAGGCG
  CTGGTGGGAG GGACCGAGGA TGGGCGTGGC TTGGAGACCC AGCGCGTTGT CTCAGACTCT
  ATACCTATGG TGGTGGGTGT TTGGGCAGGG CCTCTCAGCA TCCCTTCCCT CCTTCGCCAG
  R
  GATGACGCGG GAGAGCGTGG TCGCCCCCAG AAGGCTTTAG ATCATTAGGC CGACCTCCAT
  GTAGATCTTT CCCCCACGGG GGACCGCTCT TGCCTGGCTA GCTCGCCTGC ATTAAGGCCT
  GGAGAAGCCC AGTGCGCGCT CGCCTCCTGT CAGCTCGCCC CCCATCACCG CCTCTGTCAC
  CGCCCCCTCC TTAGAAACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61357449	NES16731019	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47917635					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61357449	NES16731019	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:20943079 () rs orientation: forward

Symbol	Name	Function Class
Gm47079	predicted gene, 47079	within coordinates
Icam4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	1187 bp downstream
Icam5	intercellular adhesion molecule 5, telencephalin	293 bp upstream
Mir1900	microRNA 1900	468 bp downstream
Rr401259	regulatory region 401259	712 bp downstream
Rr401260	regulatory region 401260	1459 bp upstream
Rr674675	regulatory region 674675	1618 bp distal
Rr674676	regulatory region 674676	809 bp distal
Rr674677	regulatory region 674677	within coordinates
Rr674678	regulatory region 674678	564 bp proximal
Tssr83962	transcription start site region 83962	271 bp upstream
Tssr83963	transcription start site region 83963	311 bp upstream
Tssr88354	transcription start site region 88354	1539 bp downstream