rs47916175 SNP Detail

Summary

• ID
  rs47916175
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57599385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAAAGTGC CCTCTCTGAG
  CTCCAGTTTT CTCTGAATAT CAAATAAAAC CGAAGCCCAC AGGATCATTG ATGTTGTCTA
  AGTCTCCAAA ATCCTTTGCT TCCTCGTCTG TTGGCTTAAA ACAAGGCATT TGTCAGATAA
  CCGGCACACT CTTTGCAGGT GCTAGAGTTA GTGTTATATT TTTGTCCTTT TATGAATAAT
  Y
  GCAGTAAGCT ATCTGGTCCA GGCCCAACCC ATGAAATTCA CTAAAGAGAA GTGAAACTAA
  CAGTGAGCTT CTCCACCCTC CATCAAGAAT TTACTAGCTC AGTTTGTTAT CTAAGATCCC
  CAAATATAAC ATATTATTAT CACTCTAGTA TGAAAACAGT GATATTTCCC AAAACCTCTT
  TGTTCCTTGC ATTAAAAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60414474	NES15915183	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47916175					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60414474	NES15915183	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57599385 () rs orientation: forward

Symbol	Name	Function Class
Ankub1	ankyrin repeat and ubiquitin domain containing 1	Intron
Rr577155	regulatory region 577155	within coordinates
Tssr33337	transcription start site region 33337	563 bp downstream