rs47909450 SNP Detail

Summary

• ID
  rs47909450
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:97978277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTTTCAA GTAGCATGAG
  TTGGTACTGC ACAGGGTGAC AATGCATGGG GCAAAGCACA CATGCACCCT GTGCAAGCCT
  GCAAAGATGT CCTGCAGGGC AGCATGGGCC AGTGCTGCCC AAACACCCTG GACTCATTAC
  TCACTTGACT TTTAATTAAC TTCTTGTCAT TGCATATCTA GAAACATCCT GTTTACTGTT
  K
  CCAGTATTTT TGAAACCCAA CGTTCAGTTT CACAACTCCA TATCCACGAC CAACAGATTT
  TAAAAGTGGG ACTACAGACA GCAGGCAGGA GTTAGCGACA CTTCCATGAC AGTTTTCGGG
  GAAGAGGAAT GCCTCTGTCA GTGGAGGTTC TGGGATAAGG GACATGTCTT TGACACTCTA
  ATCTGATTTC ACAGTAGAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147085093	ENSMUSSNP5731959	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47909450					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:97978277 () rs orientation: forward

Symbol	Name	Function Class
Nfia	nuclear factor I/A	Intron
Rr367651	regulatory region 367651	1358 bp upstream
Rr595683	regulatory region 595683	within coordinates
Rr595684	regulatory region 595684	1192 bp proximal
Rr595685	regulatory region 595685	1347 bp proximal