rs47908890 SNP Detail

Summary

• ID
  rs47908890
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153387557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCCTGAGG CCACTCATCC CCTACCACTG CCACATCCCT
  GACAACTTGT CACATCAACC TCCAGATTGG CACTAGCCTG CTCTGTGCAC TAATCTGACC
  M
  CCCTGACAAG CAGATGGAGA AGACCTCAGG GCACTCACCC CCACTGCTTA GCTGTGTGAC
  CCTGGGCAGA AGAATTGACA TCTCTGGGCT GCGGGGTTT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147996066	ENSMUSSNP719120	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47908890					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153387557 () rs orientation: forward

Symbol	Name	Function Class
Gm75205	predicted gene, 75205	1599 bp upstream
Gm75208	predicted gene, 75208	1846 bp upstream
Gm75218	predicted gene, 75218	975 bp downstream
Rr567674	regulatory region 567674	1989 bp distal
Rr567675	regulatory region 567675	1356 bp distal
Rr567676	regulatory region 567676	517 bp distal
Rr567677	regulatory region 567677	1109 bp proximal
Rr567678	regulatory region 567678	1610 bp proximal