rs47908789 SNP Detail

Summary

• ID
  rs47908789
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153337002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCAGCTAA CCATTCTTTT
  CAAATGACCA ACACAAGACA TTACCAACTC ATGCATAAGT GAGAAAAATG TGACGTGTAC
  TGTCAAGCGG CGAGGTTTGC AGAGATGGAA TGGAGTGTTG ATTGGTTCAG ATTCCACATG
  ACATCTAACC TTCACACATA AAGACACTCC AAGTGGGGTT CTGCAGTGTC AGGGGTTGAA
  Y
  GGCCACAGGA TGTTGAAGCA GCCATCCAAA CACCCTCTTT TCCAATACCA TATCTGCCTT
  AGGTTGTATT TTTCTCCATC TACCTCAGTG GACACATCAA ATCTCAACAG ACTGGATCAG
  AGATGATACA AGAACCCAGC TGTCTTCTGT AAGGGGAGAT GGGAGACTGT GCGTCAACTG
  CTACCATTTC TACTACTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136110122	ENSMUSSNP6661647	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47908789					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153337002 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587712	regulatory region 587712			667 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr32432	transcription start site region 32432			436 bp downstream
Tssr36231	transcription start site region 36231			240 bp upstream