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rs47908008 SNP Detail
Summary
  • ID
    rs47908008
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr1:172318945 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTCATAGCGC CTGTGGGCGA
    GAACCGATTA ATTGATGGCC CACTGCAGTA TCGTTCTCCT TGGTACTTGA GAAGTACAGC
    CCTGGGTAAT ACAGTTAAAG CCAGAGACCC TGACATGAGG AAGGCCCACC AGGAAGTCTC
    ACCTCCCTTT CTGACCTCCC TGGACCCTCC CGCACATACA GTTTCTCAGC AGAAGGAATC
    W
    GGGTGGGTAG GCTTGCCTGC CATGCCTCGT GAAACAGGGC TGACTTGGAA AAGCGAGTGG
    CCTCTGGAAC AGGATGGGCT TTTATCACAC ATCCCAATTC GGGTCCTTAA GGTCCTGTAG
    CAACTTGGCC CATGACTACA AAGGGCAGAA CCAGGAAGAG GTGTAGAAAG GCCCTGAGGG
    TTCTGGGAAT TCCGGAATGG                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
ss146193644 ENSMUSSNP5479177 ENSEMBL ENSEMBL_Sanger f SNP A T A
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
rs47908008 SNP A T A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:172318945 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi1051 CpG island 1051 673 bp distal
Igsf9 immunoglobulin superfamily, member 9 Intron
Noncoding-Transcript-Variant
Rr423588 regulatory region 423588 1670 bp distal
Rr423589 regulatory region 423589 790 bp distal
Rr423590 regulatory region 423590 611 bp distal
Tssr10205 transcription start site region 10205 802 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory