rs47906384 SNP Detail

Summary

• ID
  rs47906384
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135900330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCGA GGGCCAAATT GTGCGATGTG
  Y
  ACCCGCAGGC CGGCTGCCGG TAATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321354367	CHEV_4_135728934	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47906384					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135900330 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15100	CpG island 15100			within coordinates
E2f2	E2F transcription factor 2			Coding-NonSynonymous
				Coding-Synonymous
Rr367754	regulatory region 367754			565 bp downstream
Rr398609	regulatory region 398609			1568 bp upstream
Rr602302	regulatory region 602302			615 bp distal
Tssr39670	transcription start site region 39670			731 bp downstream
Tssr39671	transcription start site region 39671			624 bp downstream
Tssr39672	transcription start site region 39672			592 bp downstream
Tssr39673	transcription start site region 39673			577 bp downstream
Tssr39674	transcription start site region 39674			440 bp downstream
Tssr39675	transcription start site region 39675			266 bp downstream
Tssr39676	transcription start site region 39676			159 bp downstream
Tssr39677	transcription start site region 39677			63 bp downstream
Tssr39678	transcription start site region 39678			148 bp upstream
Tssr44029	transcription start site region 44029			696 bp upstream
Tssr44030	transcription start site region 44030			415 bp upstream
Tssr44031	transcription start site region 44031			19 bp downstream