rs47904064 SNP Detail

Summary

• ID
  rs47904064
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118999742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGA CAAGCTTTGT GTCCTTTCTG
  Y
  CTTTAGGCTA TTATGAGTAG TTCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147324445	ENSMUSSNP489881	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320473957	CHEV_2_118994997	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47904064					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118999742 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12107	CpG island 12107	1008 bp distal
Gchfr	GTP cyclohydrolase I feedback regulator	Intron
Rr563426	regulatory region 563426	1478 bp distal
Rr563427	regulatory region 563427	1625 bp distal
Rr563428	regulatory region 563428	878 bp distal
Tssr19604	transcription start site region 19604	1482 bp downstream
Tssr19605	transcription start site region 19605	1426 bp downstream