rs47902179 SNP Detail

Summary

• ID
  rs47902179
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172462587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGC TCCAAGCCTG TCTTCTCCAG
  W
  GGGAGGCAGA CTCTCTTCTC TAATG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss120013357	PARCsnp_1.20757	PARC_SEQ	INBRED	f	SNP	T	A
ss120015567	PARCsnp_1.10936	PARC_SEQ	INBRED	f	SNP	T	A
ss320126712	CHEV_1_174565151	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs47902179					SNP	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172462587 () rs orientation: forward

Symbol	Name	Function Class
Gm35601	predicted gene, 35601	within coordinates
Rr396594	regulatory region 396594	1826 bp downstream
Rr423643	regulatory region 423643	1964 bp distal
Rr423644	regulatory region 423644	1115 bp distal
Rr423645	regulatory region 423645	1194 bp distal
Tssr10245	transcription start site region 10245	1945 bp downstream