rs47899596 SNP Detail

Summary

• ID
  rs47899596
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156366671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAC ATTGGGATTA AAGGCCTATG
  M
  CACCCTGCCA GGCTAGGTAG AACTA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145798935	ENSMUSSNP102648	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320072356	CHEV_1_158469232	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47899596					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156366671 () rs orientation: forward

Symbol	Name	Function Class
Rr421192	regulatory region 421192	508 bp distal
Rr421193	regulatory region 421193	892 bp proximal
Rr421194	regulatory region 421194	1142 bp proximal