rs47896657 SNP Detail

Summary

• ID
  rs47896657
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41333279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTAACCA ATGCAATGCT
  GCCATGCAGC CGGGGAAGGG GGACGTAGGA GACATTTGAA GCACTCTGAG TCACTCGATA
  GCCTAGCTTC ATGGCTTCTG TCACCCCTCT AGAGAGCTGT TAGATTGGTG AGGTCACCGT
  GAGAGTCCTA GTAGCTAGTT AGGTGATAGC AGGCTTAAAG GTCAGGGAGA CTGGGACCTC
  S
  CTGGTAATCA TCCGCCTGCA GCACTAGCTT CTGTAACTGC AGGACACTGA CTCCTGGTCT
  ACAGAATGGC CTACAGATCT ACAGAGTCAC TACCTCTGGC CCTAGGTGGA GAGGTAACAT
  TCTAAACTTC TTACAGCATA AGATTACTAT ATAACCAGAG GCTTTCTAGT AAGGACAAAG
  GCACAGCATT GTCCCCTGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss60398353	NES15902918	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs47896657					SNP	C	C	C	C	C	C	G	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60398353	NES15902918	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41333279 () rs orientation: forward

Symbol	Name	Function Class
Gm66268	predicted gene, 66268	1833 bp upstream
Rr575940	regulatory region 575940	1866 bp distal
Rr575941	regulatory region 575941	1947 bp distal
Rr575942	regulatory region 575942	1349 bp distal
Rr575943	regulatory region 575943	163 bp distal