rs47896513 SNP Detail

Summary

• ID
  rs47896513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141232907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTAAGAA CACTGACTGC
  TCTTCCAGAG GTCCTGAGTT CAAGTCCCAG CACCCACAAC CATCTGTAAT AGGATCTGAT
  GCCCTCTTCT GGAGTGTCTG AAGGCAGATA CAATATACTT GTATATATTA AATAAAAATA
  ATATTTTAAA AAAGAGAGAG AGAAGTTAAA GCCAGTGAGA GGGCTCAGAG GTAAAGAGCC
  Y
  AGACTGCTTT TCAATAGGAC CCGGGTTCAA GACCCATCAT GGCAGCTCTC AAGTGTAACT
  CCAAGATCTG ACACCCTCAC ACACAGACAT GCATGCAAGC AAAACACTAA TTCACACAAA
  GTAAAAATAA ATTATTTTTT AAAAGAGAGA AAAAATGGCA AGGAGTTACT AAATAAAAAG
  CCCAGAGCCA GGGCTCTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147739639	ENSMUSSNP6828	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47896513					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141232907 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603780	regulatory region 603780			799 bp distal
Rr603781	regulatory region 603781			336 bp proximal
Rr603782	regulatory region 603782			1514 bp proximal
Rr603783	regulatory region 603783			1787 bp proximal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant