rs47894969 SNP Detail

Summary

• ID
  rs47894969
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116455258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATGTCCC AAGCTTTCTA
  AATGATGGCA GTTGGACTAG GCCATGTTCT CAAATGTCAA AAGAAAGTTG TCATTTATTT
  CAAACTGATT TCAGCAAATC CTCCGCGGTG GCCTACTTAC ATATTTAGTG CTTTGCTAGC
  ATTGATCAAG GCTCCATTAA ACTACAAACA AATGGAAAGA AACAATGTCT GCAACTTCAC
  S
  ACAGAGACAC ATCTTACTTT TCCATTCTAT TTCGGAACGC GATACCAAAG GAGTCAGCAA
  AGATCAGAGT GTAACGCTAC AAACACACAG CACAACAAAA GTGTACGTTT GTTTTCCAAT
  GACAAATCCT ATATCGACGT CTGGTAGCAC ACTGCACAGT GCATAAAGTT TTCTGCGAGT
  AACGACTGTC TAAAAGGCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60436516	NES15939136	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47894969					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60436516	NES15939136	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116455258 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13738	CpG island 13738	161 bp proximal
Gm43191	predicted gene 43191	Intron
Mfsd14a	major facilitator superfamily domain containing 14A	Intron
Rr397966	regulatory region 397966	891 bp upstream
Rr583758	regulatory region 583758	within coordinates
Rr583759	regulatory region 583759	1058 bp proximal
Tssr31364	transcription start site region 31364	152 bp upstream
Tssr35324	transcription start site region 35324	483 bp downstream
Tssr35325	transcription start site region 35325	661 bp downstream
Tssr35326	transcription start site region 35326	928 bp downstream
Tssr35327	transcription start site region 35327	945 bp downstream
Tssr35328	transcription start site region 35328	962 bp downstream
Tssr35329	transcription start site region 35329	981 bp downstream
Tssr35330	transcription start site region 35330	1034 bp downstream