rs47893977 SNP Detail

Summary

• ID
  rs47893977
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129818954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGAAT TTTGTCCTGT TTCCTGGAGG
  Y
  CATCTGTTTG CTTCTTTCTT GTTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147454474	ENSMUSSNP6724060	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321316094	CHEV_4_129602405	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47893977					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129818954 () rs orientation: forward

Symbol	Name	Function Class
Rr600383	regulatory region 600383	1601 bp distal
Rr600384	regulatory region 600384	92 bp distal
Rr600385	regulatory region 600385	1280 bp proximal
Rr600386	regulatory region 600386	1635 bp proximal