rs47893042 SNP Detail

Summary

• ID
  rs47893042
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17943471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACGAATAA ACAACTGAGA
  GAGGAAAGGA TGTAAATAGA GTCACAAAAG CACTAGCCCC AAACAGAGTG TGCGCACATG
  CCAAACAGAC ACAGGGAAGT CAGGTTTTCA AGGTGGGTTT AAGCTCCATT GAAACACACA
  TCTGTGCCTC AGTAGGTTGT TATAGCTTTG TGGACAAGAA GCCACAGACC AGCAGTCTGT
  Y
  CCAGAACCTG GCTGCTTACA CCCTTGTTGC CGTCTCAAAC ACTTCATCCA AGAGTACCTT
  TTAAGCTTTC TCATGTTTGC ATTTCTGACA CTTTAATCTG AGCATTCTTT GAGTATTTTA
  CTGATCTGAA CCAAAATGAT GATTTGTCCT CACCACCTCT CAGAGCTTTG TGCATGATTC
  AAACCTAGCA GAGCATCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133025454	ENSMUSSNP4776273	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47893042					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17943471 () rs orientation: forward

Symbol	Name	Function Class
Rr626887	regulatory region 626887	326 bp proximal
St7	suppression of tumorigenicity 7	449 bp downstream