rs47890943 SNP Detail

Summary

• ID
  rs47890943
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156958807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATTTTCA TTTGGTTGGC
  TGTTTTTTTG AGACAGAGTC TCACTATGTA GCTCTGGTTG GCCAGGAACT TGCTATATAG
  ACAAGGCTGG CCTTGAACTC ACAGAGATCC ACCTGTCTCT GCCTTCTGAG TGCTGGAATT
  AAAGGGGTGC ATCATCACGC CCTGTCACAA ACAACTTTTA TTAGTCTTTA AAATGCACAA
  S
  GGGAGGAGTC TCACTGAAGC GCTCTCAGAT TCTCTCTTAC TGACCCCCCC GCTCTACACC
  ACCATTATAT ACCAGTTTAT TATTCCATAA ATACAATGAA TAACACTTTA TAAAATATAA
  TAATTCACAT TACCAAGGAG ATTATTACCA GATCATATCG GTAGAATGAC TATCATTCTA
  AAATTTAGGG TTTTTTTCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148092281	ENSMUSSNP4828141	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47890943					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156958807 () rs orientation: forward

Symbol	Name	Function Class
Rr568435	regulatory region 568435	1927 bp distal
Rr568436	regulatory region 568436	67 bp proximal
Rr568437	regulatory region 568437	240 bp proximal
Rr568438	regulatory region 568438	641 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron