rs47890637 SNP Detail

Summary

• ID
  rs47890637
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109763780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTTTCTT AGGAACCCAG
  AGCCCCATGC TTGCTAGGCA AGGGCCCCAA CCCTGATCAA CGCTTTAGCA GGCGTCCTTT
  TGCTCAAGTC TAGAGCGTCA CTGGTGCCAA CTCTCCAACA CAGGGAGGAA TTGGCTTTGC
  TTAATTTTGC TGCAGAGTGG GCTGGCCCTG CTAAATCCAG GGTACCGGGC ACTTAACACT
  G
  TGAGGTCGCT GTGCGGAGCT AGACTCTGGG CGCTCCCGTT TTTTCCTCAC CACCCAGGTG
  TCCATTTTCT CTTTGCCGCG ACGTGCCTGC ATCCTTTTCT GCCTTGGAAT TATAATCGAA
  ACACTCGGTT CAGTCGTGAG AAACATGTTT CATATATGCA ACGGGTGCTC CGATGTTTCT
  ACGACTAGCC TTAGGAGCCT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss145643889	ENSMUSSNP6155830	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs47890637					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109763780 () rs orientation: forward

Symbol	Name	Function Class
Gm72506	predicted gene, 72506	within coordinates
Gm72511	predicted gene, 72511	within coordinates
Rr1426	regulatory region 1426	within coordinates
Rr407345	regulatory region 407345	163 bp distal
Rr653199	regulatory region 653199	1287 bp distal
Rr653200	regulatory region 653200	1308 bp distal
Rr653201	regulatory region 653201	within coordinates
Rr653202	regulatory region 653202	253 bp distal
Rr653203	regulatory region 653203	345 bp proximal
Rr653204	regulatory region 653204	352 bp proximal
Rr653205	regulatory region 653205	400 bp proximal
Rr653206	regulatory region 653206	423 bp proximal
Rr653207	regulatory region 653207	1477 bp proximal
Rr653208	regulatory region 653208	1910 bp proximal
Tssr2367	transcription start site region 2367	308 bp downstream
Tssr2368	transcription start site region 2368	1653 bp downstream
Tssr68492	transcription start site region 68492	252 bp downstream
Tssr74253	transcription start site region 74253	295 bp downstream
Tssr74254	transcription start site region 74254	1779 bp downstream