rs47887278 SNP Detail

Summary

• ID
  rs47887278
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15744926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATTCATT TTTCTATTTA
  ATCTGTAATA CACGCAAATC CATAAAAAGT AATTGGCAAC ATAACATGTT TTAATTATAA
  TTGAGAAGAA ATGATCACGG GGTGGTTTCT AAGATAGGTG GGGATGTTTC TATGTCTACA
  TGCAGAATCA TACATACGTG TTCACATGCA TGTTTGTGCA TATGCACTTA TGTGTGAATG
  Y
  ACGTTATGTA CACATCTACC TCTATTGACA GGCAGATAGC ATGTGTCAAC AATGTTTTGG
  TTTAATTTAG GTCAAATTCT ACTATCCTGG TTATCTCCTA TGAAGCGCTT ACATTTTTCT
  TTGTTCTTCT TCTTAAGTGC CTGAGGTCTC TATTGCAGAA TTTTCTAGGT CTTTCCTGTT
  ACTTAACTTT ATCCATGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60865013	NES15988515	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47887278					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60865013	NES15988515	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15744926 () rs orientation: forward

Symbol	Name	Function Class
Mdfic	MyoD family inhibitor domain containing	Intron
Rr399574	regulatory region 399574	800 bp upstream
Rr626681	regulatory region 626681	849 bp distal
Rr626682	regulatory region 626682	328 bp proximal
Rr626683	regulatory region 626683	997 bp proximal
Tssr1783	transcription start site region 1783	374 bp downstream