rs47886871 SNP Detail

Summary

• ID
  rs47886871
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:35402117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGGCAAG AAGAGGAGAG
  AGGACATTAC TTCAGACTGG CTAGACAAGG AAGGCCTCCT CAGGAGGTGG CCTGTGATCT
  GAGTCTTCAT CATAAGAAAA ATATTTGCAT AAAGATTCAG CAGTAGAATG TTTTAGAAGA
  GTATTACTGG TGGTTTCCGG GTTACTGGTG GTTTCAAAGA ATTAAAGGAG TTTGAACAAA
  Y
  AGGGAAGCAG CGAGGGCTTT TACTCAGAAG CAAAGTGAAT GCATGGAGTG GGTGTGAAGC
  AAAGGAGGAG TGGGCTCAAA CAAGGCTGCT CAGAATTCCT CTCTCACCTG GGCAACTTCC
  CTGTAAGCCT CCTGAAGAAG GCAGGGTTGG TTGGTAGGGG CAGCTTGTTT GTGAGCTTTT
  GCCAGTAAAC TATTGGCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60877174	NES15975778	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47886871					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60877174	NES15975778	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:35402117 () rs orientation: forward

Symbol	Name	Function Class
Rr628509	regulatory region 628509	1025 bp proximal