rs47885348 SNP Detail

Summary

• ID
  rs47885348
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:70454352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTATGTCA GGACAAGCCT
  AAGGTTGGAA AGCAGCCCGC ATTGCCTCTG AGTCCCCAGA GATTCCTGCC TGTTGCCTGC
  ATTGGGGTTG GGCTGATAAC AGAGCTTGAC CCTGGATGAC ATTAAACTCT GGAGGAAGTT
  GGAAATCAGG CAGGCAAACT TGCACCATCA CCCAGGATCC AGCGCTGCGG GACATGGTAG
  C
  CTCAGCTGAG CAACTTTTAG GTGCAATCTG GCAGGACAAG TTTGTCATCT GATGGCTTAA
  TTCCATCCCA ACAGCCTCAC TGTAAACCCA GTCGTGGCCT CTCCTAGGAT GCTTGCCTTT
  GTGCATGATT TCCCATTAGT CATTCTCCTC TAACCAGACA GGCAGGATGA GATTTGTGTG
  TGAACTCCTG TGTGTTAACA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146496720	ENSMUSSNP6566243	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47885348					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:70454352 () rs orientation: forward

Symbol	Name	Function Class
Megf9	multiple EGF-like-domains 9	1187 bp upstream
Rr376659	regulatory region 376659	645 bp upstream
Rr398312	regulatory region 398312	920 bp downstream
Rr593887	regulatory region 593887	697 bp distal
Rr593888	regulatory region 593888	304 bp proximal
Tssr42123	transcription start site region 42123	1230 bp upstream
Tssr42124	transcription start site region 42124	1128 bp upstream