rs47882577 SNP Detail

Summary

• ID
  rs47882577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:42027277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGAGCTG ACATGTCACA
  TGGAGGGGTA TATAAGCAGC ATCATTTTCC TTGTTCGTTG TTCTTCTTTC GCCTATGCAA
  TCAATGCTCT CCCAATAAAC GTGTGCAGAA GGATCCTGTT GCAGCGTCAT TCTTCCTGGC
  CAGTTGAGCG CATGCAAGAT ATGAGAATCC GTCTGTCTTC ACCCTGCCTG CACATTCTCA
  Y
  TCTTCTTTGT CGTCATTGGT AAGTCAGGAA CTTCTTGCTG CTTTAAGCCT GGCCTTTACT
  TATGAAGTTG TCACGCCCCA TTACTGGTCA GTAGGATTGA AGTGATGCTA TCAAGATCAA
  GATCAGTTTG ACAATCTACA TCAAGAACTT AAAGAAGTGA TCAAGGATAG GAGCAGAATC
  AGCCATACAG GGAAACCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60395668	NES15895179	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47882577					SNP	T	T	T	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60395668	NES15895179	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:42027277 () rs orientation: forward

Symbol	Name	Function Class
Rr576014	regulatory region 576014	1715 bp proximal
Rr576015	regulatory region 576015	1800 bp proximal