rs47880591 SNP Detail

Summary

• ID
  rs47880591
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172316810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGT TCTTCGCTCC TTCCTCGAAC
  R
  GTCCGGGAAA TACAGAGTAT TTCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120011491	PARCsnp_1.19824	PARC_SEQ	INBRED	f	SNP		G	A
ss120014493	PARCsnp_1.09862	PARC_SEQ	INBRED	f	SNP		G	A
ss146193541	ENSMUSSNP2654851	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss320125686	CHEV_1_174419374	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs47880591					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172316810 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1051	CpG island 1051			1270 bp proximal
Igsf9	immunoglobulin superfamily, member 9			Intron
				Noncoding-Transcript-Variant
Rr423587	regulatory region 423587			107 bp distal
Rr423588	regulatory region 423588			444 bp proximal
Rr423589	regulatory region 423589			1324 bp proximal
Rr423590	regulatory region 423590			1503 bp proximal