rs47880471 SNP Detail

Summary

• ID
  rs47880471
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38032520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCATTTATAA GAAACACTAA GAAAATTGCT ATTGTTTTTT
  ATTATTTAAA AAAAGCTCTG AAATATAAAT GTCTATTTAA AAATGTACTT AGAATCCTTC
  A
  CATCCCAGCT TCCTGAGAAA ACCACACCAA ATGTAATTAA CGTAGCTTCA GATGTGCAAT
  CCCCCGACGT ACCATTTCAC AACTGCATAT GGTTTTTCT                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss134819121	ENSMUSSNP633813	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320714474	CHEV_3_37877293	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47880471					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38032520 () rs orientation: forward

Symbol	Name	Function Class
Gm20755	predicted gene, 20755	within coordinates
Rr575600	regulatory region 575600	1301 bp distal
Rr575601	regulatory region 575601	15 bp proximal
Rr575602	regulatory region 575602	1618 bp proximal
Rr575603	regulatory region 575603	1698 bp proximal