rs47872339 SNP Detail

Summary

• ID
  rs47872339
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17902353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCTTGCAA AAGGCCTTCA ATCCCCCCCC TCCAATGAAG
  CTGATAAAAT ATGTCCTTGG TTTTGTTATA TGTCTTAGTT CCCCTGTCAC ATTCACCTGT
  G
  AGACCAAACT TCCTTAAACT TTCACTTTTT AAATATTTTT TGTTCTCATG TGTACCTTAA
  AAGGAGCACA TACATTTCTT TTTGTGCTCA TCATACTTT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss134654106	ENSMUSSNP5934329	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47872339					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17902353 () rs orientation: forward

Symbol	Name	Function Class
Gm42187	predicted gene, 42187	within coordinates
Gm65968	predicted gene, 65968	within coordinates
Rr573861	regulatory region 573861	within coordinates
Rr573862	regulatory region 573862	184 bp proximal