rs47869596 SNP Detail

Summary

• ID
  rs47869596
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152361653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGGGGCC TTGCCGCTGC
  CCACAGCCAG TGCTGCAGCT CCGGTCAGTT GCAGTCTCTC TGTGAGAGAC TCCCAGGGTG
  GGTGGTGAGT GGTGGCCAGC TCCTCTCTAC CTCACAGATC ACTTGGAGGA TCAGAGAAGG
  CAAAGGGCAG TATGGGGGTG GGGCTGCTGG GATAAATGAA AGTCTAAGTG TCTGGAATGT
  C
  TTGGGGGAGG GGATTTTGAA ACACAGGATG GTGAGAGAGC TGTGAGGAGA GGAGAGGAGA
  GGATATACAT GGGGCGAACC TGTCCATCTG AGGCACCCAA ATCCCCAACA CTCCAGAGAC
  CAAAGAGGAT CAGGAGTTCA AGACCAGCCT TGGGCTGTCT CAAGTGACCA AGGCATGCTT
  GTCACTTAGA AGGCACCCAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321434048	CHEV_4_151651305	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47869596					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152361653 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15402	CpG island 15402	1908 bp proximal
Gpr153	G protein-coupled receptor 153	Intron
Rr605818	regulatory region 605818	1720 bp distal
Rr605819	regulatory region 605819	363 bp distal
Rr605820	regulatory region 605820	648 bp distal
Rr605821	regulatory region 605821	696 bp proximal
Rr605822	regulatory region 605822	899 bp proximal
Rr605823	regulatory region 605823	1079 bp proximal
Rr605824	regulatory region 605824	1622 bp proximal