rs47869116 SNP Detail

Summary

• ID
  rs47869116
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52170686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTTCCTG CCCTGTGTGA
  GTTTCTGTCC TGACTCCTTT TGATGATGAA CAGTGATGTA GAAGTGTAAG CCACAGAAAC
  CCACTCCTCC CCCAGCTTGC TTTTTGGTCT TGGTGTCTTC ATGCCAGCAA TAGAAACCCT
  AAGGAAGTCA ACCTCTAGTG GAGCTTCGTT TTGTATTGCA AAGTTTTTCC AAGTTAGAAT
  S
  TTGTAGAGCT CAAACATGCA ACATAACTAA AATATCCTAT TTTGAGTTTG TTGTTGAAAC
  ATAAGATTAT TTAAAGTACA TATGGCATCC TTTTTTTTTC TTTCCAGGCA CACTCTTTCA
  GTCATCTGCT AATTAGAAAT TTCATTTTTA AATGTTAAAC CTAAGTGCAG AGTGAATCCT
  GTATCCCCTG CATCCTCAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60410242	NES15916352	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47869116					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60410242	NES15916352	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52170686 () rs orientation: forward

Symbol	Name	Function Class
Rr397665	regulatory region 397665	577 bp downstream
Rr576485	regulatory region 576485	225 bp distal
Rr576486	regulatory region 576486	664 bp distal
Rr576487	regulatory region 576487	554 bp proximal
Rr576488	regulatory region 576488	1201 bp proximal