rs47868195 SNP Detail

Summary

• ID
  rs47868195
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34622692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGAATTC AAGCCCGTCT
  GCCTTTCTGC TCAGGAATTT TGGGGAGGGG AGATGAATAT TAAGGTTATA TTACCTACCA
  GTAGCCCCTC TTTGCATGTA GCTGACAAGC TCAGGTAGCA AATGAAGGAG TGGAGTGAAG
  CCTGTGACGT CACACAAATG CCCTCGTGAT GATGACAGCT TATGTCACAA GGATCTTGAG
  R
  GCCCAGAGAA GCCAGCCTGT CTGTCTAGCC ACCTAGCACA GTTTGGCTCT TATATCTCAA
  AATGTTTATA TGTTCATGTG ACATGTTTGT AGACTTGGGG ACACCTATGG GAGGTGGAAG
  TCCCCCAGGG TGACTTAACT CCAACACATT CTCCCAACAT GACAACATCC TGGGGGTAAA
  AGTTCAATGA ACACACAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60385954	NES15887875	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47868195					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60385954	NES15887875	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34622692 () rs orientation: forward

Symbol	Name	Function Class
Gm42695	predicted gene 42695	within coordinates
Rr575154	regulatory region 575154	within coordinates
Rr575155	regulatory region 575155	1472 bp proximal
Sox2ot	SOX2 overlapping transcript (non-protein coding)	within coordinates