rs47867606 SNP Detail

Summary

• ID
  rs47867606
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68842363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TACTTTTCAA TTTTCAGACC ACAGCCTAGA AGCAGGCTCA
  TGAAATCAAT GAGCTTCAAC CAATATTTAA AAATGAAACT AGAGCTGGGG GTATAGCTCA
  K
  TCACAAGTAT GCGCTGAGCA CAGGCAAAGC CAGGGTCTTG TCGCTGGTGC CAGGAAGGAA
  AAGGAGGACA GGAGGAAGGA CAGCAGAGCA ACCCTGGACC A                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135264454	ENSMUSSNP3407820	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47867606					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68842363 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ift80	intraflagellar transport 80			Intron
				Noncoding-Transcript-Variant
Rr578096	regulatory region 578096			638 bp proximal
Rr578097	regulatory region 578097			683 bp proximal