rs47865075 SNP Detail

Summary

• ID
  rs47865075
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:150588797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGTCGTCA GCGCCCTACC
  TGCCGGGCCC CCAAGGCCTC CTGACCGGGG GCGGGCTGCC AGGCCAGGGG CGCTCCGGCT
  TCTCCGTCCC TAAGGAAAAC GTCAAGATCC CTTCTAAGAA TCCGGGGAGG TCCCGAAGGC
  TGACAGGCTT CTCTTGGGGC TTCCACGCTC GCAGTGAGGC GAGAGCTGTG TCAAAGCCGG
  M
  GGTGCAGGCG CCAGCCGTTC GCTCAGACGA AACCGGAAAT ACCTCCCTCA CCTCCACCGG
  GACCCATCGC TCTGTAAGCA CTTCCACCAT CTTCCTCTCC AAGCCCTCCC CCACCCCACT
  CCACCCCCTC CAAAAAAAAA AAAAAAGAAC TTCCGCGAAC ACACGAACCT CCGGGAAGAC
  GAGAGACCGT CCAAAACGTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60859603	NES15988828	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47865075					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60859603	NES15988828	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:150588797 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17110	CpG island 17110			within coordinates
Gm71525	predicted gene, 71525			within coordinates
N4bp2l2	NEDD4 binding protein 2-like 2			Intron
				mRNA-UTR
Rr399543	regulatory region 399543			312 bp upstream
Rr625784	regulatory region 625784			59 bp distal
Rr625785	regulatory region 625785			within coordinates
Rr625786	regulatory region 625786			256 bp proximal
Rr625787	regulatory region 625787			270 bp proximal
Rr625788	regulatory region 625788			535 bp proximal
Rr625789	regulatory region 625789			1063 bp proximal
Tssr49954	transcription start site region 49954			24 bp downstream
Tssr54667	transcription start site region 54667			106 bp upstream
Tssr54668	transcription start site region 54668			within coordinates
Tssr54669	transcription start site region 54669			85 bp downstream
Tssr54670	transcription start site region 54670			228 bp downstream