rs47864866 SNP Detail

Summary

• ID
  rs47864866
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105610396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCTGCTC CAGGGGGAGG
  GTGTGGGATT TGTACCTTCA TTTGGCCTCC CAGGGTACCT GCACACATGT GGCACACACA
  TACATAAAAA TAAATCTTTA AAAAGGCAGA GAGGTTTGTA AGGAGTATGA TATGTTAGAC
  TCACAAGGGT TTAAATGATA TGCAGGGGAA ACTGAGGCCC AGGAAAGCAT TTGAGTTGTT
  R
  CCCCAACCAC AGTGCTACAT TTTTGTCAAG AGCTCAGACT GCTTGCCTCT CCTGGCAGTT
  CAACCACAGC CAGTACCCTA AATTCCAAAG ATGTTCATGC CCAGGTTTCA GGGATGGAGA
  AAACCACAGA TCTGCAAATG TTTACCGAGA GCTCCTTACA ACCGGCTGCT GTTCTGCAGG
  GTGAAGATAT AACTGTGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135577600	ENSMUSSNP4922934	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47864866					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105610396 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13661	CpG island 13661	1441 bp proximal
Inka2	inka box actin regulator 2	1519 bp upstream
Rr367522	regulatory region 367522	1342 bp upstream
Rr582755	regulatory region 582755	1081 bp distal
Rr582756	regulatory region 582756	1029 bp proximal
Rr582757	regulatory region 582757	1888 bp proximal
Tssr31079	transcription start site region 31079	1577 bp upstream
Tssr31080	transcription start site region 31080	1608 bp upstream