rs47861199 SNP Detail

Summary

• ID
  rs47861199
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:22032650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGATGGA TTCTCAGGGA
  TTGACGAGTC TCATATGCAC TCCAAAAGGT AACACATTTC AAAATGACTG TGGAGTGTAA
  TAGCCAGTTA TGATATCATT AGCAGCAATG TACTACGGAG GCTTGGTGAT GGGAGTTCAC
  AGGTTCTTCT AACAGAAATG CCACGTTATA GCAATATTTA AAGAGACTGG TAAATATAAG
  C
  TATGTGCTGT GTAGTTTCAT GTCAACTTGA TGTAAGGTAA AATCATATGT GAGGAGAGAC
  CCTTGGTTTT AAAATGCTTC CATAAGATAA GAATGGAAAC AAGCCTATAG GGCATTTTCT
  CTACTACTGT TCAATGTGGA GGGCCCAGCC CCTTATGGTG GTCCTTTTCT ATAAGACAGC
  AGGCTAAGCA AGTCATGAGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146959932	ENSMUSSNP3397612	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs47861199					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22032650 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1373	CpG island 1373	1648 bp proximal
Raet1a	retinoic acid early transcript 1, alpha	1858 bp upstream
Raet1e	retinoic acid early transcript 1E	1791 bp upstream
Rr428833	regulatory region 428833	1328 bp proximal
Rr428834	regulatory region 428834	1846 bp proximal
Tssr92677	transcription start site region 92677	1644 bp upstream
Tssr92678	transcription start site region 92678	1718 bp upstream
Tssr92679	transcription start site region 92679	1770 bp upstream
Tssr92680	transcription start site region 92680	1815 bp upstream