rs47861059 SNP Detail

Summary

• ID
  rs47861059
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72359195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGT CAAGGTTCAC AGCCATGGCC
  K
  GCTGTCTAAT GAATGTGAGC AGTTA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133284317	ENSMUSSNP449851	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
ss321821602	CHEV_6_72332206	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47861059					SNP	T	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72359195 () rs orientation: forward

Symbol	Name	Function Class
Gm52494	predicted gene, 52494	within coordinates
Rr632157	regulatory region 632157	1801 bp distal
Rr632158	regulatory region 632158	1254 bp distal
Rr632159	regulatory region 632159	1624 bp distal
Rr632160	regulatory region 632160	1167 bp proximal
Rr632161	regulatory region 632161	1268 bp proximal
Tssr61448	transcription start site region 61448	1729 bp upstream
Tssr61449	transcription start site region 61449	507 bp upstream
Tssr61450	transcription start site region 61450	453 bp upstream
Vamp5	vesicle-associated membrane protein 5	1744 bp upstream