rs47858618 SNP Detail

Summary

• ID
  rs47858618
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141296780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTACAGTGG TGCTCAATAA
  ATATCCGTTT ACTTTAATTG AGTGGGAATA AATAGCATTT ACCAGAAACC CTTTGCTGGC
  AGACAGTTGC ATTAGGCTGC TGAGAACTAT AGCATATTCT CCCTGGAGGA GAAGGAAGCA
  CAGCCGCTTT TAGTAGCTAC CTTTGCTCCA AGAGGGCAGT CAAGCTGTAT GATCAAGTAT
  K
  ATCACAAGAA AAACAGTTTA ATCCAAATGA AATGTCCTGT TATTACAAGT AAACTCTAGA
  CAAGAGGGAA GACTAAGAAC AGCATTGGCT CCTGACACTT GTCTGTGATG AAAACTTTCC
  CATCTTGAGA AATCATTCCT GGGCTGAGAG ATGGCTCAGT GGTTAAGAGT ATTGACTCTT
  CTTCTGAAGG TCCTGAGTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss61092023	NES16588689	PERLEGEN	MM_PANEL2	f	SNP	T	G	T		G	G		T
ss320993588	CHEV_3_141253983	CHEVERUD	SCREENING_POP	f	SNP				G			T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs47858618					SNP	T	G	T	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61092023	NES16588689	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141296780 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586339	regulatory region 586339			1150 bp distal
Tssr32042	transcription start site region 32042			1045 bp upstream
Unc5c	unc-5 netrin receptor C			Intron
				Noncoding-Transcript-Variant