rs47858495 SNP Detail

Summary

• ID
  rs47858495
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164709055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTT GTTTTCTTGG TCCTTTACAT
  Y
  CTGAGCCTTC CTGTCTACTC CGAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148232409	ENSMUSSNP2004578	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320606972	CHEV_2_164692635	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs47858495					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164709055 () rs orientation: forward

Symbol	Name	Function Class
Gm75526	predicted gene, 75526	within coordinates
Rr374207	regulatory region 374207	within coordinates
Rr569739	regulatory region 569739	within coordinates
Rr569740	regulatory region 569740	602 bp proximal
Rr569741	regulatory region 569741	1293 bp proximal