rs47858425 SNP Detail

Summary

• ID
  rs47858425
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74795107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCGTCAGC TCAGCTCAGT
  TCATAACCTA AAGCAGCTGC CTTTCCCAGT GCCAACTCAG ATTCTCTGCA GATGTTTCCT
  TATGACCCAT CCACATGTTT GCTAAATATC ATCTGTTAAT TCCCCCCAAA CATCCTGGAT
  CTAGTTCTTT TATGTGTAAC TCGACTTAAG GTCTTAAAAT AGATGACAGC AAAAACATTT
  W
  AAAAATATAT CTCACAGGTA CAATTGTCTT GAATATCATC AGCACACTAA CTCCGTAGTT
  GGACTCCAGT CTTAAAGGGC ATTCCAGCTA TTTTACGACA AACGGAGGTA AGGCATGTGC
  CCATTGTCCC TAGTCTTTAG CTTTTGATCA TAGGATTTCA ATGAATCACC ATCAGTAGGA
  AGAGAGAGAA GTCTCAACTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146764220	ENSMUSSNP224655	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47858425					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74795107 () rs orientation: forward

Symbol	Name	Function Class
Gm75057	predicted gene, 75057	693 bp upstream
Igs15	intergenic site 15	within coordinates
Rr559413	regulatory region 559413	within coordinates
Rr559414	regulatory region 559414	208 bp distal
Rr559415	regulatory region 559415	337 bp proximal
Rr559416	regulatory region 559416	712 bp proximal