rs47854649 SNP Detail

Summary

• ID
  rs47854649
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134164763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGA CTTGGTAGTA GGTGTCATGT
  A
  CAAAGGCCCT CCCCAGGGAT CCACT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147530268	ENSMUSSNP5172693	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321347822	CHEV_4_133993367	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47854649					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134164763 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15040	CpG island 15040	282 bp distal
Gm30453	predicted gene, 30453	within coordinates
Rr601675	regulatory region 601675	449 bp distal
Rr601676	regulatory region 601676	1741 bp proximal