rs47849499 SNP Detail

Summary

• ID
  rs47849499
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108203952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGCTAAAAT GATAATGCCC TCTAGAATAA AACAAAGCAA
  AATTTAACAA GAATGCTGGG TATGATGGAG TATACCTTTA ATACCAGCAC TCCAGAAGTA
  R
  ACAGGTAGAT CTCTGTTGAG TTTCTGGCCA GTATGCTCTA CATAAACCCC CTCTCCCTTA
  CGTCTCTGGT GTTGAGTAGA TTTATAAAGC ACTTTAAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss133497812	ENSMUSSNP1533903	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321892122	CHEV_6_108176985	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47849499					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108203952 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636058	regulatory region 636058	687 bp proximal