rs47849216 SNP Detail

Summary

• ID
  rs47849216
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51917285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGTTAAC AGTTCAATGA
  GGGCACCTGA AGCCCCTCAC ATACAGGCTG GCCTTGGCAC CTACCTGACA CTCAAGTCTC
  CTTTGTAGGG ATACAGCCCA CTATTAGCAG AGACCCAACA CAAGAGGGAC AGATAAGAGG
  TTGCTAAAAG TCCACACTGT CTGCAGGTGA ATCCTCTCGG AAATAAACGG AATCATTCTG
  R
  GAGAGGCAGA TTATCCACTG AATTTCACAG AGGAAAACAT GAAGTAAAGT TCTAGGGCTA
  GATAACAGGA TTCACAGAAA CTGCTTTTCC ATGGGTTGTA GGATGAGACT GTCACTCAAA
  TGGTGTTTCT TGTGTCTGGT ATAGTTCTTT GGGTACCAGG GACTCCCTCC CATTTGGAGA
  AAGAATCCGT TTAATTAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60411349	NES15908576	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47849216					SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60411349	NES15908576	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51917285 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13149	CpG island 13149	1886 bp distal
Maml3	mastermind like transcriptional coactivator 3	Intron
Rr576436	regulatory region 576436	296 bp distal
Rr576437	regulatory region 576437	1212 bp proximal
Tssr876	transcription start site region 876	643 bp upstream
Tssr33242	transcription start site region 33242	769 bp upstream
Tssr33243	transcription start site region 33243	707 bp upstream
Tssr33244	transcription start site region 33244	683 bp upstream
Tssr33245	transcription start site region 33245	624 bp upstream