rs47846070 SNP Detail

Summary

• ID
  rs47846070
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52892131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGTCCCT CAGGAGGGAT
  GGATGTTGTA TTTTAGATAG TGTACTTTCC AGGTCTAAGT GCAGCAGGCT GTAACTTCCT
  TCCTTCCTTA TTCTCTCGGT GTACTGATGC TTTCCTTTAG TGCACAGACA CGTTTCCAAG
  GCTCGCTGTA AATATCTGCT CATGGCACAC ACATCAGCTG TGGCTCTGTT TCTATTAACT
  R
  ATCATTTTTC TCTTTTGGGT TCACGTTTCC TGTTCCTAAG CAGTCCTGGG TGTTCCTACA
  GTTCTGGATG GACTCATGTC TTCATGTACG ACGCTCCCAG TCATCCTTCA AAGCAGTGAG
  TTCTGCTAGG AAGTCAGTGA GCTGAGTTCA AGATTAGCAT GGTATTTAGT GTGAGCTCAG
  GACTCCAACA ACCCATCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135180515	ENSMUSSNP4586552	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320766344	CHEV_3_52788632	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs47846070					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52892131 () rs orientation: forward

Symbol	Name	Function Class
Cog6	component of oligomeric golgi complex 6	Intron
Gm65168	predicted gene, 65168	within coordinates
Rr397670	regulatory region 397670	823 bp upstream
Rr576615	regulatory region 576615	399 bp distal
Rr576616	regulatory region 576616	721 bp proximal