rs47844646 SNP Detail

Summary

• ID
  rs47844646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121403321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAA TTCTTAAGTG TAGTTTAAAT
  Y
  TAATCTATCT TTTATATGTT GGTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147391652	ENSMUSSNP5463330	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320483850	CHEV_2_121398576	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47844646					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121403321 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr563850	regulatory region 563850			1319 bp distal
Rr563851	regulatory region 563851			1381 bp distal
Rr563852	regulatory region 563852			584 bp distal
Rr563853	regulatory region 563853			863 bp distal
Rr563854	regulatory region 563854			1341 bp proximal