rs47844256 SNP Detail

Summary

• ID
  rs47844256
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121128612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTAG GGGACTTGGG GTGGAAAGGA
  M
  GGGGAATCTG AGACAGAAGC GCCTA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147383214	ENSMUSSNP4586361	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320482577	CHEV_2_121123867	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs47844256					SNP	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121128612 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12154	CpG island 12154			1458 bp proximal
D2Dcr65	DNA Segment, Chr 2, Derry C. Roopenian 65			379 bp distal
D2Mit445	DNA Segment, Chr 2, Massachusetts Institute of Technology 445			398 bp distal
Map1a	microtubule-associated protein 1 A			Intron
				Noncoding-Transcript-Variant
Rr563801	regulatory region 563801			1633 bp distal
Rr563802	regulatory region 563802			within coordinates
Tssr19741	transcription start site region 19741			461 bp upstream
Tssr19742	transcription start site region 19742			1352 bp upstream