rs47833974 SNP Detail

Summary

• ID
  rs47833974
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:101468278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGAACCA AAATCTTTCA
  CCCTACATTA TGATAAATTA TATTCTTAAC TAATCTAGTA CCCTTGAAAC AAAGGTGGTT
  CAAACTTTCC ATAATGCTGT GATAAACTGT CCCCAGTGAC TCAAGTGCAA ACAGATTTAT
  TTCACCTCAC AATTCAAAAG CATCCATCAC AGCAAGACAG GGGCCCATGA ACTCGAAGTA
  R
  CAGGTCAGAA AGCAGAGAGC CATGAATGCT TGGGTAGCTC ACTTTCTCCC GGTTCACCCA
  GGCAAGGATC CCACACGAGG GAACAATGCC ACTGACAGAG ACCCATTGGT TAGCCCAATG
  AAAGGATGCT CCCACAGGCA CGGCCAGAGG CCTGACTCTC GGATGATGCT ATTTCTCCAG
  TTGACAACTG AGACTAAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147079063	ENSMUSSNP7217170	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320429650	CHEV_2_101478090	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47833974					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101468278 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	349 bp downstream
Rr561526	regulatory region 561526	1678 bp proximal